There is only one up to date “official” reference and that is the bear creek (aka Jerry Brown) Map Books. I would rate those maps at 5++ stars. They are that good - the most accurate and easy to use maps I have ever had on a hike. I am a bit of a techie type and they work great with a GPS. With those maps I never got lost for more than a very bit short amount of time, and they always got me right back on track. (www.bearcreeksurvey.com)
There are some guides put out by the CDTS which run north to south and some hikers use those. In a lot of places they route you somewhere other than the official route, but very few hikers do the official route for the entire distance anyhow. When I hiked I went northbound and had a hard time figuring the descriptions, which all flow in the opposite direction. It was very confusing to me and I ended up relying on maps alone. (http://www.cdtsociety.org)
There is another set of maps by Jonathan Ley that often follow trails that neither CDTS or bear creek show. Those maps are free and on CD. They also have some other useful hiker friendly information on them and I found them helpful. They are not very GPS friendly. (http://www.phlumf.com/travels/cdt/)
On my hike I used 95% bear creek maps plus a few Ley maps which I pre-printed for alternates I wanted to try. I also carried the Ley CD to use in case of a fire or other closure. I was stopped in my tracks when the trail was closed by a fire in Montana. None of the maps showed a large enough area to help. Jerry Brown quickly produced a map that he thought would avoid the fire and made it available on his web site. I borrowed a computer in Lincoln and printed it, then hiked around the fire with no problems.
You also should get Yogi’s guide. It really helps with re-supply and access issues. (http://www.pcthandbook.com/index.php)
The trail changes every year so you should wait until spring to get maps. I think there is a new Yogi’s guide out so maybe start with that.
rideon